Bioconductor Random effects

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limma repeated measurements blocking random effects

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by Jane ▴ 10

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995

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limma rna-seq edger random effects

updated 4.4 years ago by Gordon Smyth 50k • written 4.4 years ago by mjgarcia • 0

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1.2k

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random effects interaction limma rna-seq

5.0 years ago flippy23 • 0

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887

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rnaseq limma edger deseq2 random effects

5.3 years ago tcalvo ▴ 90

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2.5k

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limma-voom duplicatecorrelation random effects

updated 5.5 years ago by Gordon Smyth 50k • written 5.5 years ago by tcalvo ▴ 90

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2.8k

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batch effect Coeficents non estimable block random effects limma design matrix

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by mheydarpour ▴ 10

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1.2k

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deseq2 random effects batch effects RNA-seq rna-seq

updated 6.8 years ago by Michael Love 42k • written 6.8 years ago by Dipro • 0

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3.5k

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rna-seq edger mixed model random effects lme4

updated 7.9 years ago by Gordon Smyth 50k • written 7.9 years ago by Ekarl2 ▴ 80

8 results • Page 1 of 1

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Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0

Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

> Any suggestions for methylation data segmentation? I think the same segmentation can be used.

Comment: deseq2 results by swbarnes2 ★ 1.3k

Cross-posted https://www.biostars.org/p/9594331/#9594458

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k

The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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Teacher to Michael Love 42k